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2022

Новости за 12.12.2022

Is vigilance a personality trait? Plasticity is key alongside some contextual consistency

Plos.org 

by Claudia Mettke-Hofmann

Animals regularly scan their environment for predators and to monitor conspecifics. However, individuals in a group seem to differ in their vigilance linked to age, sex or state with recent links made to personality. The aims of the study were to investigate whether a) individuals differ consistently in their vigilance, b) vigilance is linked to other personality traits and c) other factors affect vigilance in the colour polymorphic Gouldian finch. Birds were tested... Читать дальше...



Transcription factor binding process is the primary driver of noise in gene expression

Plos.org 

by Lavisha Parab, Sampriti Pal, Riddhiman Dhar

Noise in expression of individual genes gives rise to variations in activity of cellular pathways and generates heterogeneity in cellular phenotypes. Phenotypic heterogeneity has important implications for antibiotic persistence, mutation penetrance, cancer growth and therapy resistance. Specific molecular features such as the presence of the TATA box sequence and the promoter nucleosome occupancy have been associated with noise. However, the... Читать дальше...

Rapid molecular diversification and homogenization of clustered major ampullate silk genes in Argiope garden spiders

Plos.org 

by Richard H. Baker, André Corvelo, Cheryl Y. Hayashi

The evolutionary diversification of orb-web weaving spiders is closely tied to the mechanical performance of dragline silk. This proteinaceous fiber provides the primary structural framework of orb web architecture, and its extraordinary toughness allows these structures to absorb the high energy of aerial prey impact. The dominant model of dragline silk molecular structure involves the combined function of two highly repetitive, spider-specific... Читать дальше...

Inferring selection effects in SARS-CoV-2 with Bayesian Viral Allele Selection

Plos.org 

by Martin Jankowiak, Fritz H. Obermeyer, Jacob E. Lemieux

The global effort to sequence millions of SARS-CoV-2 genomes has provided an unprecedented view of viral evolution. Characterizing how selection acts on SARS-CoV-2 is critical to developing effective, long-lasting vaccines and other treatments, but the scale and complexity of genomic surveillance data make rigorous analysis challenging. To meet this challenge, we develop Bayesian Viral Allele Selection (BVAS), a principled and scalable... Читать дальше...

Metabolic reprogramming in Rheumatoid Arthritis Synovial Fibroblasts: A hybrid modeling approach

Plos.org 

by Sahar Aghakhani, Sylvain Soliman, Anna Niarakis

Rheumatoid Arthritis (RA) is an autoimmune disease characterized by a highly invasive pannus formation consisting mainly of Synovial Fibroblasts (RASFs). This pannus leads to cartilage, bone, and soft tissue destruction in the affected joint. RASFs’ activation is associated with metabolic alterations resulting from dysregulation of extracellular signals’ transduction and gene regulation. Deciphering the intricate mechanisms at the origin... Читать дальше...

Mixed mechanism of conformational selection and induced fit as a molecular recognition process in the calreticulin family of proteins

Plos.org 

by Ashalatha Sreshty Mamidi, Avadhesha Surolia

The fundamental question on the mechanism of molecular recognition during ligand binding has attracted a lot of scientific scrutiny. The two competing theories of ligand binding–“induced fit” and “conformational selection” have been proposed to explain biomolecular recognition. Since exploring a family of proteins with similar structural architectures and conserved functional roles can provide valuable insight into the significance of molecular structure and function... Читать дальше...

Close-kin mark-recapture methods to estimate demographic parameters of mosquitoes

Plos.org 

by Yogita Sharma, Jared B. Bennett, Gordana Rašić, John M. Marshall

Close-kin mark-recapture (CKMR) methods have recently been used to infer demographic parameters such as census population size and survival for fish of interest to fisheries and conservation. These methods have advantages over traditional mark-recapture methods as the mark is genetic, removing the need for physical marking and recapturing that may interfere with parameter estimation. For mosquitoes, the spatial distribution... Читать дальше...

The curse of the protein ribbon diagram

Plos.org 

by Philip E. Bourne, Eli J. Draizen, Cameron Mura

Does reductionism, in the era of machine learning and now interpretable AI, facilitate or hinder scientific insight? The protein ribbon diagram, as a means of visual reductionism, is a case in point. Does the visual reductionism of the protein ribbon diagram facilitate or hinder scientific insight? In this Perspective, Philip Bourne encourages a reevaluation of its value in an era of machine learning and AI.

Open science priorities for rigorous nature-based climate solutions

Plos.org 

by William R. L. Anderegg, Anna T. Trugman, Jonathan Wang, Chao Wu

Nature-based climate solutions (NbCS) hold promise, but must be based on the best available science to be successful. We outline key ingredients of open data and science crucial for robust and scalable nature-based climate solutions efforts, as an urgent call to action for academic researchers, nongovernmental organizations, government agencies, and private companies. Open data and science are crucial for robust and scalable nature-based climate solution efforts. Читать дальше...


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